aina91

Thx！ You really helped me a great favor. | | 艾娜 邮箱：[email protected] | 签名由 网易邮箱大师 定制 On 06/08/2020 00:57, RegnerM2015 wrote: @aina91 you change the dimension reduction slot as well...

@achamess, have you try use harmony coordination replace pca coordination ? adata.obsm["X_pca"] = adata.obsm["harmony_cell_embeddings"]#store Seurat harmony embeddings in 'X_pca' Then , sf.SCCAF_optimize_all(ad=adata, plot=True, min_acc=0.9, prefix = 'L2', use='pca')

Yeah,I see. Is there any partial scripts in github which are correlated to 'Genome-wide association studies','Linkage disequilibrium score regression', to get input files ( master files, z files and ld...