meniaG

icon indicating a website link https://agavriilidou.github.io/

icon company Wageningen University icon location The Netherlands icon location Postdoctoral Researcher @mibwurrepo, Computational Biologist, Specialized in microbiome analysis

Results 4 comments of meniaG

Keep original contig name

Hi @tseemann! Any updates on this? It seems that more and more people are using prokka for annotating metagenomes and it is indeed important to know in which contig the...

Error in plot Visualization

You can try to unclick the "show genes to scale". I had the same problem and I had to correct the genbank file. It was because of the gene coordinates...

Less taxa than expected

I used GTDB-Tk's classify workflow and GTDB classification of these MAGs showed they belong to a new family (same as tree topology). However, I calculated AAI% and 16S ID% and...

Less taxa than expected

I sent you my data. Thanks a lot!