adamrp

Currently, there are some columns replicated between qiita_user and study_person (name, affiliation, phone, address). It would be better to remove those columns from qiita_user, but then when a new user...

ontology table changes

3

- [x] `version` column will be removed - [x] `ontology` column will have a unique constraint (thus allowing it to work with `convert_to/from_id`) - [ ] when metadata is loaded,...

align_seqs.py assumes pynast is installed

3

The [`min_percent_id`](https://github.com/biocore/qiime/blob/master/scripts/align_seqs.py#L110-L114) option is only added if pynast is installed, but on [lines 148-149](https://github.com/biocore/qiime/blob/master/scripts/align_seqs.py#L148-L149) the option is assumed to exist. I noticed this problem while attempting to run pick_open_reference_otus.py with...

Document and add references for beta diversity metrics

8

AFAIK, the documentation requested by the author of [this post](https://groups.google.com/forum/#!topic/qiime-forum/K2Bufi7qhas) on the QIIME forum does not exist.

Option to disable logging of keys' ASCII values

4

Right now the SQLite database that stores the information stores not only the keystroke counts, but also the ASCII values and timestamps. There should be an option to disable the...