Adam Novak

I've encountered a real-life signal today that does arise from inside the allocator (see #127), probably because I've managed to do a double-free or something elsewhere in the program. It...

This is still a thing we want for running Singularity on our infrastructure. Right now we're having to hackily wrap the commands and rewrite the image specs to point at...

We still need this so we can remove our wrapper hack.

This would also be relevant to #4142 if we want to make the way Toil passes around its config information a little more extensible. The Toil architecture is to take...

If you want to get at the object on the leader, it would be in the `config` field on the Toil context manager, when you are inside it.

We'd also need to handle concurrent attempts to pull the same image from different hosts, right? In toil-vg we had to add [a bunch of code that dealt with Singularity...

We forward local port 3000 to the cluster whenever you `toil ssh-cluster`, here: https://github.com/DataBiosphere/toil/blob/9e73170ba180e76f93b967da2271e74c64d72f53/src/toil/utils/toilSshCluster.py#L51-L55 So you should be able to just `toil ssh-cluster`, and then on the same machine run...

We think we might be able to use Toil's `MessageBus` to make this work, since information about the backing HPC jobs doesn't get stored in the JobStore. We would need...

Expression tools are still allowed to use a full Node environment for their JS, which means they can call out to the filesystem and expect to see the files they...

> the first 64KiB of contents will be loaded for any inputs that have loadContents: true set. We probably could do this with streaming? We might have to no longer...