Anthony Nash

icon indicating a website link https://scholar.google.com/citations?user=MZcEEh0AAAAJ&hl=en icon indicating an email [email protected]

icon company Arizona State University icon location Warwick, UK icon location Senior Computational Biophysicist and Chemist, Software Engineer, and Medical Statistician. I build novel chemical software to solve protein-disease models.

Results 2 comments of Anthony Nash

excessive CPU time spent on gc (even after manually adjusting gc thresholds)

I'm running into the same problem whilst running modin.pandas. I've installed dask version 2022.1.1 for python 3.9. Seems like dask grinds my calculations to a slow trickle.

mdtraj==1.9.3 may cause failure when installing mdtraj

To anyone running into this problem, it's a code legacy issue. Edit the requirements.txt, remove the line referrin to mdtraj, and install the mdtraj dependency via `conda install -c conda-forge...