acarmas1

Hi @yuukiiwa Thanks for answering, this is my gff file: https://1drv.ms/u/s!AokqkR3muxL0g5QuiTk0rORmIBAHdg?e=WjqL1P It looks like this: 

Hi Yuk, I tried what you suggested and now I'm getting this error: /opt/anaconda3/2021.05/lib/python3.8/site-packages/xpore/scripts/dataprep.py:21: PerformanceWarning: indexing past lexsort depth may impact performance. pos_end += eventalign_result.loc[index]['line_length'].sum() /opt/anaconda3/2021.05/lib/python3.8/site-packages/xpore/scripts/dataprep.py:72: SettingWithCopyWarning: A value is...

Hi Yuk, This is my fasta file: https://1drv.ms/u/s!AokqkR3muxL0g5Q6tbjcR5wEDrwLrg?e=kL5f6I and yes I also have this gtf file: https://1drv.ms/u/s!AokqkR3muxL0g5Q7thCGIpc3mwk4Rw?e=IIgcUp Thanks, Camila

Hi, Thank you so much, it worked. I just have one last question, I run xpore dataprep with a different fasta file, that looks like this:  Which has all...

Hi Yuk, I run dataprep with the reference genome of honey bees, and it worked, but I got a diffmod.table empty, also I realized my data.json file is empty, too....

Hi Yuk,  This is my eventalign.txt files and yes I used the same fasta file that I run in nanopolish eventalign.

After running xpore diffmode I got this message: Using the signal of unmodified RNA from /opt/anaconda3/2021.05/lib/python3.8/site-packages/xpore/diffmod/model_kmer.csv 0 ids to be testing ... And the diffmod.table is empty.

Hey, I'm having the same problem. I run xpore dataprep but the data.json data.log and other files are empty. Do you know how we can fix it?