abrusell

Thank you, fixed!

[application.properties.zip](https://github.com/user-attachments/files/18362777/application.properties.zip) [ANDE81_prob_genomiser.yml.zip](https://github.com/user-attachments/files/18362778/ANDE81_prob_genomiser.yml.zip)

Yes, absolutely. cloned with git and installed with human annotations Thanks

I didt have the output but I'm sure I didn't have any error. Anyway, I've re-done it: ``` make PREFIX=. install-human-annotation Download AnnotSV supporting data files: curl -C - -LO...

Thank you for your reply. Everything looks correct: ``` ls -l $ANNOTSV/share/AnnotSV/jar/exomiser-rest-prioritiser-14.1.0.jar -rwxr-xr-x 1 abrusell interactive Nov 10 /g100_work/OPBG2_prod2023//NGS_tools/AnnotSV_3.5.3/share/AnnotSV/jar/exomiser-rest-prioritiser-14.1.0.jar grep 2406 $ANNOTSV/Makefile install-exomiser-1: 2406_phenotype.zip $(MKDIR) -p $(DESTDIR)$(SHAREDIR)/$(ANNOTSV)/Annotations_Exomiser/2406 unzip 2406_phenotype.zip -d...

I think that's the point! I've tried several port numbers and it seems to respond only on port 10001... (I've restored server.port=XXXX in application.properties) Can I force the service to...

Thank you, but the mystery thickens... as I said, the service runs manually using port 10001 ``` port=10001 (base) 11:01:12 abrusell@login02:/g100_work/OPBG2_prod2023/NGS_tools/AnnotSV_3.5.3 $ java -Xmx4g -jar $jarFile --server.port=$port --spring.config.location=$applicationProperties & [1]...

> I'm lost... me too... > Are you using AnnotSV in a conda environment? no

The mistery is that exomiser in AnnotSV 3.4 is actually working... on port 10000! What changes in AnnotSV 3.5.3?