Anthony Bretaudeau
Anthony Bretaudeau
Ok, I better understand now, thanks for the answer! If `make install` installs the bins we should be able to use it in the conda recipe (ping @cmonjeau) For the...
The easiest way to change the config is to set environment variables, for example for admin_users: GALAXY_CONFIG_ADMIN_USERS Every config key in the config.yml file have a corresponding GALAXY_CONFIG_* variable
I think I still have the problem, unless you mean you changed something for the local job runner? I just tried replacing `preexec_fn=os.setpgrp` by `preexec_fn=os.setsid` and it seems to fix...
ok, I understand, perfectly reasonable to let this code as it is
It would be great also if there was a way to have the same kind of option when exporting GFF: if there are some insertions/deletions the downstream features coordinates needs...
On my side I've made some profiling: most of the time is spent in [this for loop](https://github.com/GMOD/Apollo/blob/2.6.5/grails-app/controllers/org/bbop/apollo/OrganismController.groovy#L1583), it takes ~0.2s per organism on my test setup => ~10sec for 40...
@hexylena I took the liberty to dockerize your code there: https://github.com/galaxy-genome-annotation/apolpi I hope/guess it's ok for you (licensing too?)
Cool thanks, used on apololo.genouest.org and bipaa.genouest.org/apollo now
Yep I noticed it's slow too but I don't know why, maybe it's doing things on the data dir!?
I don't have a diff, but it's in the postgresql 12 changelog: https://www.postgresql.org/docs/12/release-12.html `Remove obsolete pg_attrdef.adsrc column (Peter Eisentraut)`