Abhijit Chakraborty

segment-cnv error

2

Hi, I am trying to run the segment-cnv code on the cnv-profile file, but getting the following error - ``` root INFO @ 08/04/23 11:40:02: # ARGUMENT LIST: # CNV...

TPM value difference of a sample between runs

2

Hi, Thanks for developing such a nice and easy to use tool. I am currently analyzing a bunch of ONT long-read samples and trying to map them using isoquant. I...

JSONDecodeError while running

1

Hi, I am facing the following error while running the code - ``` Command line: ./IsoQuant/isoquant.py --reference Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz --genedb Homo_sapiens.GRCh38.111.gtf.gz --fastq ../data/Nalm6_EV_full_length_reads.fastq --labels Nalm6_EV --data_type nanopore --output Nalm6_EV_isoquant --threads 4...

BiocParallel errors

3

Hi, I am trying to process 18 samples but getting the following error - ``` Error: BiocParallel errors 1 remote errors, element index: 1 17 unevaluated and other errors first...