Andrej Benjak

icon company University of Bern icon location Switzerland icon location Senior Bioinformatician. NGS oncogenomics, bacterial and plant genomics.

Results 2 comments of Andrej Benjak

strelka2 very slow and trashing disk on ext4

In case this helps: (tumorBAM=11G, normalBAM=29G, using -j 6, on a i7-8750H CPU) I ran strelka-2.9.10 on my internal 1TB ext4 disk. It finished in 2 h. I ran the...

strelka2 very slow and trashing disk on ext4

Sorry, it turns out I did not run it on tmpfs, but on an SDD drive (my bad, I forgot to mount the /tmp as tmpfs on my new laptop,...