Abolfazl (Abe)
Abolfazl (Abe)
https://ion-elgreco.github.io/polars-distance/
https://mystmd.org/guide/citations
Hi @victorsanchezarevalo – thanks for your interest in using ScreenPro2. > Does ScreenPro2 support the analysis of CRISPR knockout (KO) screening experiments? Short answer, no. We didn't use or test...
@victorsanchezarevalo – you may also see this issue regarding guide counting task: https://github.com/ArcInstitute/ScreenPro2/issues/28
Related Data Suggestion: "Computing the Human Interactome" – https://www.biorxiv.org/content/10.1101/2024.10.01.615885v1.full Download Data http://prodata.swmed.edu/humanPPI/bulk_download cc @kexinhuang12345
Hi @tshauck – I found this documentation similar to your SQL implementation in biobear! In general, I think it would be great if biobear can handle `.gmt` format and support...
I think you can assume data is already normalized and use pyDESeq2 for differential expression analysis skipping normalization step. This tutorial can help you understand analysis steps and logical reasoning...
@lauraluebbert – I simplified this feature as discussed here https://github.com/pachterlab/gget/pull/124#issuecomment-2054150430. It should be more straightforward now and it works smoothly on my end, let me know what you think!
also https://github.com/mims-harvard/TDC/issues/256
maybe here? https://www.cancerrxgene.org/downloads/bulk_download