Anthony Bayega

I followed the README.md directions but when I run install.sh I get the following error; TypeError: **init**() takes 2 positional arguments but 4 were given A brief of the installation...

GFA usage help

1

Hi, pliz help me understand how I use the GFA file. I want to assemble ONT reads but I have no idea how to get statistics on the miniasm assembly.

Hi, thank you for this tool. I see in the code that it is coded to read chromosomes as "Chr". Do you have a version that can accomodate more general...

Hi, could you help me understand why this program hangs on this file and cannot process it (it's a 3 line sam file). Thanks [1.txt](https://github.com/mlafave/sam2pairwise/files/1475512/1.txt)

run report

6

Is there a way we can get an output from the run showing things like which contigues were joined, etc. Also, is the analysis done with repeat masking and if...

Error in `colnames

3

Hi, I don't understand why am getting this error when I run; meta

Minimap2 compatibility

3

Hi, although it clearly says that you have tested AlignQC with GMAP, I wonder if you have also tested Minimap2 and can recommend using Minimap2. Minimap2 runs very fast and...

Hi, do the adapter sequences in the reads affect for example the evaluation of the percentage of the read that aligns to the reference? Also the poly(A) tail, does it...

Hi, I was having issues with the script 'Mandalorion_7_Gene_expression.py' ; it was hanging on the read_data function at a specific line and never moving on. I created a script that...