Aaron Mussig
Aaron Mussig
Hi @sdispater I've added this to [conda-forge](https://github.com/conda-forge/orator-feedstock). Would you like to be a maintainer of the recipe?
Thanks for this! We will include this in the next version of GTDB-Tk.
Hi Ben, GTDB-Tk can't do that specifically but we can look at adding this in the future. If it helps, you can get the untrimmed alignments in individual files for...
There are a few different answers depending on what you're trying to achieve Broadly, you would need to: 1. Find out what markers were used to infer the GTDB-Tk classification...
Not sure why it's choosing that version, try force the version to install with `conda install -c bioconda gtdbtk=2.1.1`
Hi, this is a pplacer error so we won't be able to help too much with this. It appears that pplacer is failing on loading the locale information. You should...
Hi, unfortunately the genome will need hits to marker genes since GTDB-Tk needs hits to either the 53, or 120 single-copy marker genes (for archaea and bacteria respectively). You may...
Hello, thanks for submitting this issue. This will be fixed in the next release. As a workaround, you can manually specify the taxonomy using the `--custom_taxonomy_file` instead.
Hello, if you rename the MAG to not include any of those characters then it will work, e.g. `mv binny_I01R01.000347_C91_P96_Actinobacteria[class].fasta binny_I01R01.000347_C91_P96_Actinobacteria__class__.fasta`
Hi, is this on OSX? GTDB-Tk won't run on a Mac as pplacer causes a dependency issue. A workaround is to use Docker.