Aaron Gu

Shift is too slow

2

The performance of shift is really slow. I think it can be improved if regions are not modified in place, but are added as new regions and old regions are...

Performance improvement

2

Python Pandas is slow for the large number of single-row operations in bedshift. It may be faster to read bedfiles into a native object like a list or dictionary and...

.sub file environment variables do not have a value

7

I saw that divvy is being used to generate the .sub files for a looper job submission. However, I could not easily find anywhere in the vignettes describing how to...