aallahyar

Results 7 comments of aallahyar

Please enhance documentation on the recommended use of the BWA MEM -M and -Y option

Thanks @mdkeehan for this contribution. Indeed this part is not documented well. And I see that even after two years, it's not merged to the main branch yet. I assume...

bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'

I got the same error. I wonder if you managed to figure out why this happens?

bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'

> I got the same error. > I also wonder if you managed to figure out why this happens... Hey @dexon9109 It has been more than 3 years, so I...

bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'

I am a bit confused as nanopore does not have subreads? PacBio has. In case the long read is the problem, I can also share that my read had a...

bwa bwasw crashed with the error '[vfprintf(stdout)] Value too large for defined data type'

> Sorry @aallahyar about word "Subreads".I thought long reads could be called that, but I won't be calling them that anymore. > In fact, this lengthy read contained multiple contig,...

rule assign_fragments crashes due to pyarrow problem

Thanks @Mittmich! Indeed I encountered a similar problem and through google I made the same conclusion. To be clear (and as @Mittmich mentions), simply modify your `pore_c.yml` files to (i.e....

Update README.md

This is a correct update and should be merged with the master branch (i.e., the `README.md` is outdated). However, a minor update is needed. The setting item in the `Dictionary`...