SeungJin Park

Thanks for your rapid reply. yes. it worked well before and openssh file exsits. but it occurred intermittently.

Thanks. it works partially. But another error occurred ``` rule predict_test: input: data/2020plus_10k.Rdata, output_bladder/features.txt, output_bladder/simulated_summary/simulated_features.txt output: output_bladder/pretrained_output/results/r_random_forest_prediction.txt jobid: 1 python `which 2020plus.py` --log-level=INFO classify --trained-classifier data/2020plus_10k.Rdata --null-distribution output_bladder/simulated_null_dist.txt --features output_bladder/simulated_summary/simulated_features.txt...

Unfortunately I got another error with pandas==0.25.3 ``` Version: 1.2.3 Command: /addData01/01_Program_to_install/63.2020plus/2020plus-master/2020plus.py --log-level=INFO classify --trained-classifier data/2020plus_10k.Rdata --nul Running Random forest . . . Type: Exception: module 'rpy2.robjects.pandas2ri' has no attribute...

rpy2==2.9.4 pandas==0.25.3 I got error again. I'm too tired to fix numerous errors if I thank you for your generous support. Can you give me docker image? ``` Version: 1.2.3...

Thank you for your rapid answer. 1) read depth - How to calculate read depth from GAM file? 2) Which tool - hap.py 3) precision and recall - INDEL Precision...

Thank you for your reply. I will show you the result.

I got same issue although i installed BiocFileCache 2.10.1 and ExperimentHub 2.10.0. Any other solution?

I’m also waiting for this answer.