Ali
@avilella , it's not concerning that progen2 likelihoods are not correlated with ESM-1v, especially for data that is not well-represented in Uniref (like antibodies) FYI, i would simply use the...
there seems to be two separate concerns mixed in here. would be better to have separate issue threads for @avilella : yes there are many occurrences where different models may...
for @aiXander , are you using the latest codebase? there was a critical bug in the codebase for the first couple of days after release. it caused a lot of...
a couple notes: - we excluded the non-amino acid tokens when scoring sequences as they aren't relevant for variant prediction. it doesn't have that large of an effect however -...