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Using AF-Multimer with custom MSA

Error: list index out of range, always occurred when I tried the custom MSA neither on monomer nor complex prediction, which was generated by [HHblits Toolkit server](https://toolkit.tuebingen.mpg.de/tools/hhblits) as instructed in...

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

> Yes. The input feature generation is similar to AF2. A sample [shell script](https://github.com/FreshAirTonight/af2complex/blob/main/example/run_fea_gen.sh) is here for individual sequences. What about this .py file: [run_af2c_fea.py](https://github.com/FreshAirTonight/af2complex/blob/main/src/run_af2c_fea.py), which is also said to...

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

> > > Yes. The input feature generation is similar to AF2. A sample [shell script](https://github.com/FreshAirTonight/af2complex/blob/main/example/run_fea_gen.sh) is here for individual sequences. > > > > > > What about this...

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

Hi! I still have problem with getting the features of my dataset. I am not able to use AF2complex locally and I am not sure how to run these sh....

how can I create the input features for my own dataset by running the py. file? Is it possible to simply the input to only sequence of the protein?

Thank you for the instruction! I have successfully got the features from other AF notebook(it used 0 sequence template and I am not sure whether it would matter compared to...