Adrian Zimmer
Adrian Zimmer
I've set up a Galaxy container for testing and everything works brilliant so far. The only thing that I can not seem to get working is the display of a...
I often find myself wondering if a file upload is progressing or how much time is left until completion. It would be great if the run command had a flag...
After generating Python utilities for https://github.com/common-workflow-language/cwl-v1.2/tree/1.2.1_proposed I tried loading and subsequently saving one of the test files (`/tests/count-lines14-wf.cwl`) using the following code: ``` Python f = open("/home/adrian/Dokumente/Coding/CWL/cwl-v1.2/tests/count-lines14-wf.cwl", "r") doc =...
## Problem As @mr-c discovered, documentation strings generated by the Java and TypeScript (and perhaps also Python?) codegen link to the wrong pages. ## Example: https://common-workflow-lab.github.io/cwl-ts-auto/classes/CommandLineTool.html contains a link to:...
I've tried loading and saving [conformance test 139](https://github.com/common-workflow-language/cwl-v1.2/blob/60a963508acafee8d6b024dcb9b0eaca255a49d5/conformance_tests.yaml#L1954) with models generated by the python codegen for the cwl 1.2.1_proposed schema, which resuled in the following output: ```CWL #!/usr/bin/env cwl-runner cwlVersion:...
Currently, the Interfaces generated by the Java and TypeScript codegens contain redundancies in their fields caused by fields being passed down the inheritance hierarchy of the classes by the codegen....
Currently, types marked as optional (using the `?:` notation) still contain the undefined type. This does not cause any issues but is also redundant. To fix this, the `type_loader` [function](https://github.com/ZimmerA/schema_salad/blob/3ee2ceb51fc8ddbd1aa791d4f0c6d7465acbe200/schema_salad/typescript_codegen.py#L379)...