ZekunYin

In my opinion, I think it's necessary to dedupkicate using Picard markduplicate or samtools before calling variants. Some test (using seqc2 dataset) results show that it will generate more false...

Hi Armin, The perf result seems very interesting, I will do some profiling using different tools and give you some feedback. Best, Zekun

We are working on it now! At least we are going to support raw-bam files. I still discuss with our team and see if we can support CCS-BAM. Currently, I'm...

Hi, Now we are working on the CCS(hifi) read saved in bam format. But I'm not sure whether you are interested in the quality control for raw sequel II data...

Got it. I think plotting the length distribution is not that hard. I will see what we can do. Besides, we plan to implement a new tool for the preprcessing...

Hi Miguel, Thanks for the bug report. I've been rather busy since last month, but I will check the code and try to fix it ASAP. And could you please...

Hi, I'm pretty sure most of the SIMD kernels can be implemented using the 128bit NEON intrinsics. I think the easiest way to do this is just porting the SSE...

Hi, Is it possible to provide a streaming API to decompress file chunk-by-chunk using a single thread just like gzread in zlib? And in my test, I find that pugz...

Hi, I'm sorry that RabbitQC only offers basic quality control functions for nanopore and pacbio sequencing data. For 3GS data RabbitQC works in the same way as [NanoQC](https://github.com/wdecoster/nanoQC). Could you...

Hi, The "basic quality control functions" for 3GS data are based on [NanoQC](https://github.com/wdecoster/nanoQC). RabbitQC only reports the statistics information of the 3GS data as showed in the html report file....