Yusha Liu
Yusha Liu
Hi Will, thanks for your response -- very helpful! I think the column-wise variances of the factor matrix quantify the relative importance of the factors, but is there a way...
I see. Thanks very much for your explanations and suggestions!
Hi Will, I have a follow-up question. in the "Deviance residuals provide fast approximation to GLM-PCA" section in your paper, I saw that you proposed running plain PCA on the...
Thanks very much! That should work since I'm just trying to adjust for categorical covariates :)
@ireneortega I have encountered the same problem, and in my case this seems to be fixed by setting color = NA in your call of gpheatmap.
Hi @zhli12, I got the same error as you when running `cell_topic_heatmap`. Could you share in more detail how you finally solved this error? Did you downgrade `matplotlib`? If so,...
@SeppeDeWinter @zhli12 Is the error from calling `cell_topic_heatmap` (i.e., none of [Index(...)] are in the [columns], which was also reported in https://github.com/aertslab/scenicplus/issues/501) caused by the transpose operation in line 934...