Yueming Yin

icon company Nanyang Technological University icon location Singapore icon location I'm currently a research fellow at Nanyang Technological University.

Results 6 comments of Yueming Yin

Waiting for the training script

Hi Wei, I ran the main.py as your script and got the following error: File "TankBind-main\tankbind\data.py", line 164, in get_data new_dataset.data = new_dataset.data.query("c_length < 100 and native_num_contact > 5").reset_index(drop=True) AttributeError:...

Visualizing complexes in protein 3D structures

Thank you for your suggestion. After importing the pdb file of the input protein and inference ligand together into pymol, is the resulting complex the visualization after docking?

Issue with chemical dataset

> Hello! > > I tried to run the code with chemical datasets. However there are always some dimension problems with the SpatialGraphConv layer. For instance I ran the 'freesolv'...

Issue with chemical dataset

parser.add_argument('--label_dim', type=int, default=25) This may work with label_dim=25.

KeyError: ['mother_mask_label']

Hi @georgeoshardo Thanks for your quick reply. I was using the "main" branch. Which branch should I use? I saw four branches.

KeyError: ['mother_mask_label']

Thanks @georgeoshardo. I'm mainly interested in synthetic images, so I can skip the sections about my_lineage in the MM_lineage_example.ipynb, correct?