YuZhengMin

By the way, I found that the variable `zdata$File` is the actual path of my files. ```R > zdata$File [1] "/mnt/f/software/scATAC_data/handler/GSE129785/ArchRSubset_GSE129785_scATAC-PBMCs-Frozen/GroupCoverages/cell_type/Cluster0._.GSE129785_scATAC.PBMCs.Fresh.insertions.coverage.h5" [2] "/mnt/f/software/scATAC_data/handler/GSE129785/ArchRSubset_GSE129785_scATAC-PBMCs-Frozen/GroupCoverages/cell_type/Cluster0._.GSE129785_scATAC.PBMCs.Frozen.insertions.coverage.h5" [3] "/mnt/f/software/scATAC_data/handler/GSE129785/ArchRSubset_GSE129785_scATAC-PBMCs-Frozen/GroupCoverages/cell_type/Cluster1._.GSE129785_scATAC.Hematopoiesis.CD34.insertions.coverage.h5" [4] "/mnt/f/software/scATAC_data/handler/GSE129785/ArchRSubset_GSE129785_scATAC-PBMCs-Frozen/GroupCoverages/cell_type/Cluster1._.GSE129785_scATAC.Hematopoiesis.All.insertions.coverage.h5" ...... ```

Thank you for your reply. Wishing you a pleasant vacation!

Has this issue been resolved? I'm experiencing the same problem.

I solved it. I encountered this issue with version 1.9.6 before, but changing the version to scanpy==1.11.5 eliminates the problem.