Yoshitaka Moriwaki

Results 116 comments of Yoshitaka Moriwaki

I've found that in my case this issue was caused by my manually installed python 3.9.2 on Ubuntu 20.04.3. I found error logs in `/var/spool/pbs/server_logs/20211012`: ``` 10/12/2021 14:37:44;0001;Server@moderate;Svr;Server@moderate;PBS server internal...

This issue is now resolved (See https://github.com/brewsci/homebrew-bio/issues/1395). Your PR will pass the CI now if you merge the latest commit and push it again.

@james-vincent Your colabfold_batch seems not the latest commit. Did you install it freshly or use `./update_linux.sh` to update the latest version if you use localcolabfold? `--use-gpu-relax` arg was added on...

I also encounter such an issue but is not reproducible. The python packages and drivers you are using do not seem to have any problems, since the calculations are working...

Hi @dimiboeckaerts, I'm now developing an installer for Macbook with M1 chip. ColabFold worked on my M1 Mac finally. I will test the installer again and release the installer if...

I updated [my repo](https://github.com/YoshitakaMo/localcolabfold). Please use the installer for Mac M1 and report if some errors occurred! > The question I still have though is why it is not possible...

I use the localcolabfold installer, and it didn't reproduce the error with the latest commit of colabfold. ``` $ cat 6cdx.fasta >6CDX_1 XGCILNGRTDLGTLLFRCRRDSDCPGACICRGNGYCG $ colabfold_batch 6cdx.fasta out1/ --num-models 1 --amber...

Hi, I saw @biochem-fan 's tweet about this issue and was curious to find out more. After installing some packages with `brew install open-mpi cmake fltk fftw libomp jpeg` and...

As discussed in Homebrew-core repo, if homebrew's `libomp` is modified to keg-only, we can handle which openmp library should be used combined with environment variables such as C(XX)FLAGS.