Yiguan

Hi, Here is an example code with `geom_tile`: ```R trfile

Hi, does this tool (pipeline) work for other species, e.g Drosophila? It seems markerInfo files are only for humans? Thanks!

only use discordant reads

2

Hi, When a region having lots of discordant reads and a few split reads, I find the inferred breakpoints rely too much on the split reads. For example, ``` 3L...

Hi, A great tool for detecting inversions! My question is: For pool-seq paired-end reads data, is it possible to have the inversion frequency in the pool? Thanks!

Is <INV> the inversions I needed in output VCF file?

1

Hi: I am using lumpy to investigate inversion in pool-seq pair-end data, and I want to have inversion regions. After running `lumpyexpress` , I got an VCF output file. Are...

I am using haploid mode as following: ```bash python ~/diploSHIC/diploSHIC.py fvecSim haploid hard_1.msOut hard_1.test --totalPhysLen 5500 ``` Since i don't know the ancestral allele, I didn't use `--ancFileName` option. The...