yifan wang

[sopa_error_example_data.md](https://github.com/user-attachments/files/16575812/sopa_error_example_data.md) I think this is the same issue as I reported in another issue #107. But this one is I tried in example data. ultimately, I try to work in...

I find the same issue with my own dataset. Here is teh error code. --------------------------------------------------------------------------- ValueError Traceback (most recent call last) Cell In[8], line 1 ----> 1 patches = sopa.segmentation.Patches2D(sdata,...

I believe this issue is in the sopa.segmentation.Patches2D. I tried with image_key, it not working. I tried with points_key, it works. but there is no spatial_image with the points_key. There...

The pip version is pip 24.0 The problem mentioned failed building wheel for louvain. "ERROR: Could not build wheels for louvain, which is required to install pyproject.toml-based projects" Thanks

Sure, I would love to try this. Thank you

I actually wanna try the reconsturct the 3D models based on my Xenium dataset. We have cell_feature_matrix.h5. But, I don't know how to load this data to spateo, and how...

Thank you so much for the suggestion. I'm sorry. I'm not familiar with the hdf5 file format. is this format containing of the the morphology.image. Or any methods to add...

In addition, I'm wondering what kind of data should be in side of the anndata for 3D construction. or what the E7_8h_cellbin.h5ad including.

Thank you so much! I'm not sure if this helps, but I tried the example Xenium data and HE picture, and it worked. However, it didn't work for my pictures....

Wondering if there is new information about this issue