YiJessePi

I think this is the only option with conda. I've installed it not via conda and to do multithreading

@valeriamateo I'm currently thinking about the same thing. Any thoughts since you asked?

Thanks Torsten! So is it just a matter of time? I've actually planned to execute Roary on reconstructed bins of the same species (is there any meaning for pangenome analysis...

It might be because you have less fragments than the minimal number of fragments cutoff. The latest version of fastANI use minimal fraction of fragments instead (and I also recommend...

Hey, Did you managed to understand deepVF performance on viral RNA data?

Thank you. Of course! The config file looks like this: ` [Main] seed=11111 phase=0 max_processors=8 dataset_id=RL output_directory=/labs/outdir temp_directory=/labs/outdir/tmp gsa=True pooled_gsa=True anonymous=False compress=0 [ReadSimulator] readsim=/labs/tools/CAMISIM/tools/art_illumina-2.3.6/art_illumina error_profiles=/labs/tools/CAMISIM/tools/art_illumina-2.3.6/profiles samtools=/labs/tools/CAMISIM/tools/samtools-1.3/samtools profile=mbarc base_profile_name= profile_read_length= size=0.1...

Hey Nikolay, Do you have any input on that?

Thanks for the prompt response! I'm interested in the host of the genomes. I've looked on the table S10 in the referred paper, and beside of human-associated found host-associated and...

Is there a way to manually set the position? I'm facing this problem both with barplots and boxplot without outliers...

Hi, Thanks for your reply. Correct me if I'm wrong- since mantel is permutation based test, it could work for negative correlations pretty easily just by calculating the p-value relative...