Yasin El Abiead
Yasin El Abiead
Hello and thank you for your tool! I was wondering if there is a way for MetaboliteAdductDecharger to annotate multimeric adducts like [2M+H]+, or if there is another way in...
Hello, I was trying to cluster mzXML files from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=88a7dfeeecb74131a6d6bfb7a9db0a46 in WSL:Ubuntu-22.04 but it does not seem to recognize any spectra. My parameters and output are below: ``` falcon BAX89_BA1_01_23240.mzXML...
Hello SIRIUS scientists :) in SIRIUS 6.0.0 under Windows 11 I am still running into the same problem as described in https://github.com/sirius-ms/sirius/issues/106 which has been marked as completed. Specifically, creating...
Hello, in the original FeatureFinderMetabo paper I found the sentence "The mass trace detection algorithm offers the option to automatically infer a good estimate of Δt0.5 based on the data."....
Hello, and thank you for developing! Would it be possible to report the ClusterID in the representative spectra mgf? This would be very useful when mapping spectra back to the...
Hello and thank you for maintaining this tool. I would have two questions about the isotope detection in FeatureFinderMetabo: - How is the elements parameter used and is it even...
Hello and thank you for maintaining this. Would it be possible to add terms for the biome forming around decomposing animal bodies? If possible it would be great to have...
Hello thank you for maintaining this. I am looking for a term representing Salt marsh sediment in the ENVOEnvironmentMaterial. Would that be possible or is there already something representing it...
It seems that when using FeatureFinderMetaboIdent the masses calculated from the formulas are increased by a proton? for example when I give ``` CompoundName SumFormula Mass Charge RetentionTime RetentionTimeRange IsoDistribution...
Hello and thank you for maintaining this. I am creating empress HTMLs, through: `empress tree-plot --tree $tree --feature-metadata $metadata --output-dir empress_results` After that I manually set up different bar plots...