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A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

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Hello, I was wondering how circexplorer pick an isoform and then deduces which exons are included inside the circRNA? Knowing it only get information about the BSJ Thank you!