CIRCexplorer
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error when hisat2 mapping sort bam file
hi
when i run circexplorer3 in raw fastq file, I encountered the following error
and this is my running code:
~/.conda/envs/yyan3.7/bin/clear_quant -1 $b1 -2 $b2 -g $ref
-i $hisat -j $hisat -G $gtf -o /data1/yyan_tmp/LUNG_CANCER/analysis/CircRNA/CLEAR_output
thanks!