YOU-k

what strategy is applied to select CB

1

Hi, I both ran dropseqpipe and Cellranger with emptydrops, but i just find that the cells selected quite differ. I would like to know what exactly you applied to select...

10x v2 filter part in config.yaml

2

Hi, I would like to run dropseqpipe for 10x v2 data. and i am not sure about what to be included in config.yaml. Here is what I have, `FILTER: barcode-whitelist:...

Harmony with one variable having the same value for all cells

1

Hi there, I am trying to build a reference based on tumor cells from this small cell lung cancer dataset, https://cellxgene.cziscience.com/collections/62e8f058-9c37-48bc-9200-e767f318a8ec. They calculated PCs based on MNN obtained with all...

Hi who's concerning, I tried with `gene_module_df

Hi there, thanks for the great work. I tried with Adamson data, but the data is quite different from what I downloaded from the original paper. The number of controls,...

Try to reconstruct the exp

1

Hi there, I was trying to test the model's performance with a reconstruction task. I tried to make this work with the TransformerModel used. And when I load the weight...