Yuhui

icon location Shenzhen icon location Ph.D candidate in genetics at University of Chinese Academy of Sciences, co-cultivated by BGI. Interested in single-cell sequencing.

Results 6 comments of Yuhui

Support for 64-bit indptr data and multiple GPU？

Dear @Intron7 , Hi Severin! Thank you for your reply, and I am looking forward to your next work. At present, I will still use the regular scanpy analysis process...

Topics has been calculated to number 350, but the loglikelihood is still not optimal.

Hi @SeppeDeWinter Thans for your reply. You mean to make all four indicators as large as possible as the appropriate number of topics, but both of the metrics (Arun_2010, Cao_Juan_2009...

model.fit hangs indefinitely

Hello, currently I have a very large single-cell RNA dataset with more than 5 million cells. I tested the seacell pipeline on some of the data and found that as...

Renaming the Seacells

I also encountered this problem, have you resolved it now？Thanks！

Does LSI require all peaks for optimal results, especially when dealing with ultra-scale datasets?

Thanks for your reply @Jeff1995, you mean it would be better to select all the peaks in the LSI step. Is the subsampling scheme you are talking about similar to...

Does LSI require all peaks for optimal results, especially when dealing with ultra-scale datasets?

Hi, @Jeff1995 I have read the code related to the atlas section. However, the code appears to be somewhat complex, and I am not entirely clear on how the weights...