YDD99

thank you very much!

after i downgrade Augustus,still failure (funannotate) xly@wyb-PowerEdge-R920:~$ funannotate test -t all --cpus 40 ######################################################### Running `funannotate clean` unit testing: minimap2 mediated assembly duplications Downloading: https://osf.io/8pjbe/download?version=1 Bytes: 252076 CMD: funannotate clean...

after i downgrade Augustus,still failure (funannotate) ***@***.***:~$ funannotate test -t all --cpus 40 ######################################################### Running funannotate clean unit testing: minimap2 mediated assembly duplications Downloading: https://osf.io/8pjbe/download?version=1 Bytes: 252076 CMD: funannotate clean -i test.clean.fa -o test.exhaustive.fa...

**now i install the funannotate V1.8.14 and augutus V 3.4.0 but still not work and i check export AUGUSTUS_CONFIG_PATH=/home/xly/soft/mambaforge-pypy3/envs/funannotate/config we can see species exist** (funannotate) xly 11:20:05 ~/soft/mambaforge-pypy3/envs/funannotate/config/species $ ll...

still not work (funannotate) xly 16:29:48 ~/work/test $ funannotate test -t all --cpus 40 ######################################################### Running `funannotate clean` unit testing: minimap2 mediated assembly duplications Downloading: https://osf.io/8pjbe/download?version=1 Bytes: 252076 CMD: funannotate...

sorry that i can't help you, my issue about funannotate still not solve, good luck to you ! ------------------ 原始邮件 ------------------ 发件人: "nextgenusfs/funannotate" ***@***.***>; 发送时间: 2023年4月7日(星期五) 上午10:34 ***@***.***>; ***@***.******@***.***>; 主题: Re: [nextgenusfs/funannotate] test failure...

Perhaps you can check out this official tutorial https://funannotate.readthedocs.io/en/latest/install.html ------------------ 原始邮件 ------------------ 发件人: "nextgenusfs/funannotate" ***@***.***>; 发送时间: 2023年4月10日(星期一) 晚上10:35 ***@***.***>; ***@***.******@***.***>; 主题: Re: [nextgenusfs/funannotate] test failure (Issue #852) allright, I can try that. I removed...

run.cfg [General] job_type = local job_prefix = nextPolish task = best rewrite = yes rerun = 3 parallel_jobs = 5 multithread_jobs = 2 genome = /home/xly/work8/313/finalfasta/WYBBLT7.final.fasta #genome file genome_size =...

gcc -v Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 9.5.0-1ubuntu1~22.04' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls...