Jasper Zhao

No clear clusters in splat simulation

3

Hi Splatter team, When I use the PBMC3k data as the input for Splatter, I found that it seems the model considers all the genes to be highly variable gene....

Hi scgen team, When I used the perturbation function, I found that the size of the predicted data is not consistent with the ground truth data, for example, the stim1...

How to find all features used in training

1

Hi scDblFinder team! It's mentioned in the paper that scDblFinder utilizes multiple features obtained from the Knn network, such as projections on principal components; library size; the number of detected...

Interest in the simulated data

1

Hi scINSIGHT team, I'm wondering if it's possible for you to also open source the scripts of running the scDesign to generate the simulated data used in the paper? Since...

Question about running time

4

Hi scINSIGHT team, When I tried running the examples following the vignette, it took quite a long time to run the `sim.scobj = run_scINSIGHT(sim.scobj, K = seq(5,15,2), out.dir = './test_scInsight/test_save_sim/',...