Wytamma Wirth

I solved this by pinning `celery[redis,auth,msgpack]==4.4.7` & `kombu==4.6.11` in the `docker/requirements.txt` file. Note: == not >=

Hi @MicrobeLab, Any update on this? Would be grateful if we could access the weights from the models used in the paper.

Great idea! I'll look into adding the conda package command to run when a new release is made. In the mean time I think (haven't tried) you can use [post-deployment-scripts](https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#providing-post-deployment-scripts)...

I'm getting `TypeError: Cannot read properties of undefined (reading 'v')` did you have any luck solving?

`SafeLoader` DateTime auto-conversion should potentially be switched switched-off as per https://github.com/snakemake/snakemake/pull/709#issuecomment-730336048

Hey @pvanheus, internally GISAIDR runs a loop to batch queries with > 50 rows requested. `Loading entries in batches...` means it doing this batching. The `Returning X-Y of 140609 entries.`...

Ah I get your point! Will see what I can do to make it a bit clearer... I will have to refractor things at some point 😅

Thanks @tomwenseleers this issue is related to downloading the full metadata without the sequences. I think this might be related to the different versions of GISAID we have (touched on...

Hi @virologist! Unfortunately GISAIDR doesn't support EpiFlu at this time. But I will add this to the version 2.0 milestone.

Hey @dmontecino, Thanks for the offer! Unfortunately EpiFlu uses a completely different interface to the other Epi platforms so you’d need to create all new methods just for EpiFlu. I...