WortJohn

Targets: 3948 (1.4789%) bins failed filters (log2 < -5.0, log2 > 5.0, spread > 1.0)

1

I analysized one sample with 2p24.3 amplification and verified positive gene by FISH with cluster signal. WES had very high coverage (>60000, mean coverage 300). File tumor_sample.targetcoverage.cnn had high log2...

the bug about argument "--ignoreRG"

3

Hi, I have tumor_1.bam and matched normal_1.bam. When i execute the VerifyBamID program, i get the right result. And the log records the information "Total of 1 out of 1...

What is the difference between SA and XA for paired reads and bwa mem ? They are the same ?If i only consider the soft clipping read, which do i...

I use fastp (version 0.24.1) to clean wgbs library fastq data and find that read1 still retains many adapter. The command follows as `fastp --detect_adapter_for_pe -w 8 -i /mnt/NexData_file/home/zsr/1.develop/1.WGBS/1.FASTQ/CW619_1.fastq.gz -I...