WimS83

Would it be possible to have vcffixup also output the DP INFO field?

3

Hi, Would it be possible to have vcffixup also output the DP INFO field? After pre-processing a vcf file with vcfallelicprimitives and vcffixup, the DP field is missing from the...

Does BCFTools merge -m all also merge partially overlapping variants with different starting positions?

6

Hi, Does BCFTools merge -m all also merge partially overlapping variants? When I merge two multi-sample vcf files with bcftools and then convert the complex variants in the merged vcf...