Silvio Waschina

icon indicating a website link https://www.nutrinf.uni-kiel.de/en

icon company Kiel University icon location Kiel, Germany icon location Bioinformatician/systems biologist with a focus on microbial ecology

Results 5 issues of Silvio Waschina

Warning in `velocity_constraint`

Wit new R Versions (>= 4.2.0), the method `apply_constraint.velocity_constraint` causes the warning: In min_constrained || max_constrained : 'length(x) = 13 > 1' in coercion to 'logical(1)' The cause is a...

Prediction of ORFs before alignments

Currently, we use TBLASTN to align the genomic sequence to reference protein sequences. This works, but the performance can be improved (in terms of run time) if ORF are predicted...

Enable CMake user option `BUILD_SHARED_LIB`

## Description The CMake configuration does not respect the user option "-DBUILD_SHARED_LIB=". Package managers (and users) commonly use this main configuration option to decide whether to build the project as...

Documentation rebuild after changes

1 comment

@jotech, it looks like that readthedoc is not automatically updating the gapseq documentation webpage after a change in the documentation files. Are there perhaps some configurations that need to be...

Add libsbml

Adds the "Systems Biology Markup Language" (SBML) library. Includes a test program from the upstream source package. The $(PKG)_UPDATE section is still a placeholder. I am unsure how to write...