WPresley

I'm having the same issue. Tried reverting to version 3.0.0 for test mode and still got this error message.

Thank you for getting back to me! That did solve the initial error, but now I'm getting a new error: Traceback (most recent call last): File "/home/wpresley/.local/bin/spladder", line 8, in...

Hi Andre, No, I did update back to 3.0.2 before the run.

Hi Andre, I'm using the command: spladder test --conditionA /nfs/turbo/umms-lprasov/4942-WP/RNAseq_analysis_4942-WP/alignment/aligned_bams/Sample_4942-WP-1.genome.bam,/nfs/turbo/umms-lprasov/4942-WP/RNAseq_analysis_4942-WP/alignment/aligned_bams/Sample_4942-WP-4.genome.bam --conditionB /nfs/turbo/umms-lprasov/4942-WP/RNAseq_analysis_4942-WP/alignment/aligned_bams/Sample_4942-WP-3.genome.bam,/nfs/turbo/umms-lprasov/4942-WP/RNAseq_analysis_4942-WP/alignment/aligned_bams/Sample_4942-WP-5.genome.bam,/nfs/turbo/umms-lprasov/4942-WP/RNAseq_analysis_4942-WP/alignment/aligned_bams/Sample_4942-WP-6.genome.bam --outdir spladder_out -v It is perhaps also worth mentioning that the augmented graph I'm using was generated in...