Vivian Li Lab
Vivian Li Lab
Hi, I got the error message below when trying to install harmony on MAC R 3.6.3. Any suggestions on how to fix this? ``` installing to /Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-harmony/00new/harmony/libs ** R **...
Dear Developers, I tried to convert an h5ad file to h5seurat, but encountered the error messages below. The h5ad file was from https://zenodo.org/record/3572422#.X76nKVNKh-U (HTA08.v01.A06.Science_human_tcells.h5ad). Any suggestions on how to fix...
Dear Dylan, Is the reference scRNA-seq data used in the J20 Hippocampus Slide-seq analysis available in this repository? According to the code (https://github.com/dmcable/spacexr/blob/master/AnalysisCSIDE/j20/run_RCTD_j20_21.R), the name of the object is scRefSubsampled1000.RDS....
Hello! I'm not very familiar with Julia, and I wonder after I get the inferred_network object, instead of obtaining the adjacency matrix with different thresholds, is there a way to...
Dear survminer developers, What is the alternative hypothesis used when `test.for.trend = TRUE` in the `ggsurvplot` function? For example, if the group factor has three levels (A, B, C), does...
Hello, Thank you very much for making this tool available! I have two questions about the annotation tutorial. 1. The data used for fine-tuning and the test data are pooled...