Venkatesh Narasimhan

Hi, I’m working on a project to predict the infection phenotype of a bacterial infection, and my feature variables are genomic-level features. I’ve been trying to extract features using your...

ln: failed to create symbolic link '001-r2': Operation not permitted

2

Hi, I am trying to run Bactopia using the following command: ```bash bactopia --samples samples.txt --ask_merlin --max_cpus 2 --outdir results ``` The samples.txt file was created using bactopia prepare. I...

Finding Escherichia coli pathotype using the escherichia__pathovar module

1

Hi, I am trying to find pathotypes for about 200 E. coli genomes using the escherichia__pathovar module but all I am getting are empty cells. I have attached the output...