Daric V

Permission denied error on filterGenemark.pl

1

**Are you using the latest release?** I am using funannotate-v1.8.13. **Describe the bug** funannotate is raising a '_Permission denied_' error on _'filterGenemark.pl'_ filterGenemark.pl file is readable and executable for everybody....

Install problem

1

I am trying to install edmr as described in README. `> install_github("edmr", username = "ShengLi",build_vignettes=FALSE) Downloading GitHub repo ShengLi/edmr@master from URL https://api.github.com/repos/ShengLi/edmr/zipball/master Error: Command failed (9) In addition: Warning messages:...

BUG: Cyclic dependency on rule samtools_sort

2

**Describe the bug** I am getting an error from seq2science alignment pipeline snakemake.exceptions.CyclicGraphException: Cyclic dependency on rule samtools_sort. CyclicGraphException in rule samtools_sort in file /work/project/oob-biom/bsbii-tools/conda/envs/seq2science/lib/python3.10/site-packages/seq2science/rules/bam_cleaning.smk, line 206: Cyclic dependency on...