Simcha_Ubo

Issue about plot stackedviolin.

1

- [√ ] Additional function parameters / changed functionality / changed defaults? - [ ] New analysis tool: A simple analysis tool you have been using and are missing in...

Hi, I was trying to follow [quick-start tutorials](https://dynverse.org/users/2-quick_start/) and got errors about shiny. ``` data("fibroblast_reprogramming_treutlein") dataset

Hi, SeuratDisk brings lots of convenience to me while converting Seurat object into h5ad file. After several usage I just found a common problem in anndata object after importing h5ad...

Kernel died when running scrublet

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Hi, thanks for your powerful tool. I got kernel died error when I run codes as tutorials from scenic+. ``` doublet_scores, predicted_doublets = scrub.scrub_doublets(min_counts=3, min_cells=3, min_gene_variability_pctl=85, n_prin_comps=30) Preprocessing... Simulating doublets......

Hi, I found the class of mc_ord here should be character. Original numeric class could result in 'subscript of bounds' issue. https://github.com/tanaylab/metacell/blob/d6a6926d103ee0cb34a611c753572429c94a53d9/R/mc_plot_marks.r#L190

Hi, I am currently working with the 'import_dataset' function of MCView to import an h5ad file generated from Metacells. However, I encountered an error message stating 'Error in validObject(.Object) :...

Bug in compare_group_interactions

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Hi celltalkerTeam When I tried to run [demo](https://github.com/arc85/celltalker/blob/master/vignettes/consistent_interactions.Rmd) in different released version of celltalker, I'm stuck in the same site as follows. ``` > group_stats