Tingting Shao comments

Results 15 comments of


                                            Tingting Shao

add_cor_scores

Sorry, miss the error line, this is the error: ```python PanicException: Cannot compute correlation for type uint32 ```

"obs_names" error in snapatac2.tl.add_cor_scores

Will the tutorail will be published soon:D?

Create a cistopic object using ATAC-seq count matrix (peak by cell)?

I think he/she is referring to the tutorial `Using pycisTopic on simulated melanoma data`.

Ray processes failed to startup

Hi, I got the same error when running `run_cgs_models`. ```python >>> import ray >>> ray.__version__ '2.9.3' >>> ray.init() 2024-03-28 20:52:39,683 ERROR services.py:1329 -- Failed to start the dashboard , return...

models

Thread https://github.com/aertslab/pycisTopic/issues/106 solved my first question.

results not ideal

Liver

results not ideal

I can send one example image to you if that's better. BTW, is there a Discord channel for WSInfer? Thanks, tingting

results not ideal

Many thanks for your reply. Quick response to your first point: ``` the main reason is that the tumor model you are using was trained on breast tissue. there's no...

Memory issue even after bigmem

Hi, I think if I choose `bigmem` partition, it will be 2TiB (https://docs.vscentrum.be/leuven/wice_quick_start.html). The setting I have is: ```bash #!/bin/bash #SBATCH --account="xx" #SBATCH --job-name="r03" #SBATCH --cluster="wice" #SBATCH --partition="bigmem" #SBATCH -N...

Memory issue even after bigmem

Sorry, But I checked the history again ```bash (scenic2) bash-4.4$ seff 61416509 Job ID: 61416509 Cluster: wice User/Group: vsc35107/vsc35107 State: FAILED (exit code 1) Nodes: 1 Cores per node: 72...