Tim Monko

bioio-tifffile and bioio-ome-tiff parse ome-tiff metadata differently

2

### Describe the Bug bioio-tifffile.Reader does not properly parse ome-tiff metadata, but bioio-ome-tiff does. There is not notice given to the user which reader is being used, and given bioio-tifffile...

somewhere package dependency 'pyrsistent' got dropped

1

Hi there, In trying to install a frozen environment on a new PC, I was getting a plugin error for both clesperanto and the assistant. Reading the error helped me...

I've been setting up python/napari on a new machine, creating an environment with conda, and then pip installing various napari plugins including `pip install napari-pyclesperanto-assistant` (mostly to grab all its...

[Bug] Jupyter notebook kernel crashes with pyclesperanto but not pyclesperanto_prototype

3

**Pre-requist tasks** - [x ] My device drivers are up to date. - [x ] The [troublemaking solutions](https://github.com/clEsperanto/pyclesperanto?tab=readme-ov-file#troubleshooting-graphics-cards-drivers) did not solved my issue. **Describe the bug** In a juptyer notebook,...

### Feature Description One very useful feature of bioio is that multi-scene formats allow easy access to each scene. When a multi-scene format (such as .czi) is converted to ome_metadata,...

Add example doc comparing `screenshot` and `export_figure`

9

# Description The current examples `to_screenshot.py` and `export_figure.py` are not immediately clear on the differences and limitations of each. I have combined each document into one new example, with added...

Expose `viewer.export_figure` in the GUI

4

## 🚀 Feature As available for screenshots in the context menu (e.g. `File --> Save Screenshot...`), the new `viewer.export_figure()` functionality should be exposed to the public. ## Motivation In my...

ome-tiff files are being read with wrong preference

3

### Describe the Bug Given an image saved with `bioio.OmeTiffWriter.save()`, `BioImage` is still defaulting to `bioio-tifffile.Reader` instead of `bioio-ome-tiff.Reader` on `bioio` version 1.1.0. ### Expected Behavior After #55, `bioio-ome-tiff` is...

[BUG] Switching to 3D view while cursor text is up causes it to get stuck in view

3

**Describe the bug** **To Reproduce** Hover in 2D to get region annotation to pop up, then toggle to 3D view (such as with Ctr+Y) and the annotation stays hovering in...

[BUG] Cursor text is dark text on dark

2

**Describe the bug** I'm guessing this is PyQt6 or something? **Expected behaviour** Black text on white background or white text on black background **Env info** ``` napari: 0.6.4 Platform: Windows-11-10.0.26100-SP0...