Timothy Kirkwood
Timothy Kirkwood
I've had this issue too - e.g. [cpk](https://mibig.secondarymetabolites.org/repository/BGC0000038/index.html#r1c1). I have found a couple of homologs that should be picked up by searching for the PKS alone - I think I...
Hello, me too :( Trace is at the bottom, I think the issues lies with the html parsing after you query NCBI for the RID: ``` def retrieve(rid, hitlist_size=5000): """Retrieve...
The second error is windows specific, not CBLASTER (I think) - can you try linux? If there is a workaround please let me know, I had to get a friend...
Hi, might be way off here, but your dmnd file could be getting saved in a different folder to the one you expect (it's the only one without a filepath)....
Hi @vdemichev, tagging my question on here as its related I think. Can the speclib be exported as a TSV rather than parquet file? We are loading a fasta database...
Thanks for your response Vadim, can I ask if you have any suggestions on that conversion? I assume this needs to be done with code (ideally Python) but I've never...
Thanks for your help with this, it seems to have worked. I have had a quick look at the speclib columns, it looks like one of them has database IDs...
I have this issue as well :(
Bit late, but you should try installing Microsoft Visual C++ and see if that fixes things
Hello, Just to confirm, I had the same error following @FriederikeBiermann pr being merged into the latest version, and setting -hs to 250 from the default 500 worked for me....