TendoLiu

Some reported SV events has 0 support reads

1

Hi , I found during Manta running, there are some BND events who have zero support read pairs, but when I look at the bam file directly, I can actually...

Run error: panic: start must be less than end

8

bash-4.2$ bio-fusion \ > -r1=$R1 \ > -r2=$R2 \ > -transcript=$transcript I1104 12:57:44.433680 11841 main.go:336] Start reading geneDB I1104 12:57:44.556241 11841 gene_db.go:310] Reading transcriptome /bgfs/soesterreich/pan_data/soesterreich/Tendo/InstalledTools/af4/gencode.v26.whole_genes.fa denovo panic: start must be...

How to specifiy sample paired normal control in snakemake pipeline

2

Hi All, Maybe I missed something but are there a command in snakemake file to specify a sample-paired normal control in the snakemake file? I successfully run once in tumor...

Hi All, Is it possible to annotate the cna output file with gene name? The default output CNA plot pdf is beautiful but could not provide information at gene resolution....