TangentDeng

Dear cellrank team, thanks for the wonderful software! Recently, I get this error and can't repeat my result anymore. The env did not have been modified. ``` Computing Schur decomposition...

Hi all, I run the stream-web on docker at http://localhost:10001/. After I upload data it showed "Upload successful" and is keep showing loading. I open the windows powershell showed like...

Error in dimnames(x) <- dn : 'dimnames'的长度[2]必需与陈列范围相等（不是gsea结果也发生）

3

你好，上次我以为是只出现在IrGSEA结果，现在发现全部seurat都是如此。。 ``` heatmap_gene

Error in dimnames(x) <- dn : 'dimnames'的长度[2]必需与陈列范围相等

1

hi， great job! I get a seurat object with GSVA result by irGSVA. ``` ht1

error at def expBaseAE(adata, exp_metrics):

1

Hi dear team, thanks for the package. I get an error could you mind give some tips. ``` def expBaseAE(adata, exp_metrics): n_cells, n_genes = adata.X.shape in_dim = n_genes z_dim =...

sudo run fimoall.sh get permission denied

1

Hi, thanks for the great job! I get an error hoping for your help. In terminal sudo sh ./fimoall.sh Or rstudio ``` ### run the following codes in the R...

org.Mm.egPFAM is defunct. Please use select() if you need access to PFAM or PROSITE accessions.

1

Hi, great package! I run this: ``` data_matrix_normalized

CUDA out of memory

2

Hi ,great work! when I run ``` prior_network = pd.read_csv('./network_mouse.csv') data = cf.data_preparation(adata, prior_network) [0] - Data loading and preprocessing... Consider the input data with 1 lineages: Lineage - all:...

好全面的工具！非常棒！ great work! a issue about cnmf_obj.k_selection_plot() ``` import numpy as np ## Initialize the cnmf object that will be used to run analyses cnmf_obj = ov.single.cNMF(adata,components=np.arange(2,12), n_iter=20, seed=14, num_highvar_genes=3000,...

beginner question: how to save figure by vk.plot_projection in PDF?

1

...this is a simple question and bother me much time. I ask chatgpt and gemini can't get right answer. And check the documents too.