Yi-Ching Tang

> Thank you! It would be a great idea! Would you like to make a PR for it? DrubComb provides API for quick access to both drug and cell line...

> Thank you! Is the gene expression values available only in CallMiner? I saw in the paper they can retrieve them through public databases such as DepMap, Cell Model Passports,...

Hi, I am encountering the same error, but the **python38.linux.release-350** tarball is not available now. Do you know which existing version could solve the error?

It turns out to be the openmm problem. I modified the code at line 28 in the script: **/ab_opt/AbDock/src/tools/relax/openmm_relaxer.py** from: `def __init__(self, stiffness=10.0, max_iterations=0, tolerance=2.39*unit.kilocalories_per_mole, platform='CUDA'):` to: `def __init__(self, stiffness=10.0,...

Just in case someone has the same issue, I modified the script to fix the issue: ```{python} from openmm import unit def openmm_relax(pdb, out_pdb=None, excluded_chains=None, inverse_exclude=False): tolerance = 2.39 *...

I see. By the way, could you describe each checkpoint in the reproduction folder? Most of them have a descriptive name, but some are not intuitive.

Thank you. Re-install the developed version works for me. However, I encountered some issue with the use case "addHydrogen": ```{python} from prody import * from pylab import * import matplotlib...

problem solved!