Tamer Gezici

FileNotFoundError: No such file or no access: 'sub-01_t1w_preproc.nii.gz'

3

I am running the tutorial dockerfile and I ran into an issue like this at the example_preprocessing notebook. While executing cell: ``` plotting.plot_epi( '/data/ds000114/derivatives/fmriprep/sub-01/anat/sub-01_t1w_preproc.nii.gz', title="T1", display_mode='ortho', annotate=False, draw_cross=False, cmap='gray'); ```...

Hello all, I am trying to run example_preprocessing notebook to figure out whether if my installation is proper. I have datalad installed already. ``` %%bash datalad get -J 4 -d...

TDT usage example

2

Hi, Are there any example scripts or tutorials on the usage of TDT with AA? I am interested in doing ROI based and searchlight analysis. Any script would do the...

Saving T1 + spmT overlay as a single combined nifti file

5

Is it possible to save a T1 (added through open file) and it's spmT overlay (added as an overlay) together as a single nifti file? So that the T1 image...

Hi, I have a T1 image in NiFTI which I am doing some modifications. Such as adding additional markings to the image. Then I need to convert this T1 image...

Organizing 1st level and 2nd level results to avoid clashes

16

Hi, I am curious if there is a better way to organize GLM results when you do several different kinds of analysis on a single pre processed dataset. For example,...

Issue mentioned here: https://github.com/automaticanalysis/automaticanalysis/issues/345#issuecomment-1282368804 Can you please review this? The script works fine, but I don't know if there could be something I'm missing @tiborauer

FIR analysis - specifying a seperate BF for each event seperately.

2

Hello, We want to specify a BF in our first level model seperately for each event type, for example event 1 can be HRF and event 2 can be FIR...

Error on MaCOS

2

A lab member is running into this error when using aa in MacOS: ``` MODULE aamod_norm_write RUNNING: SPM normalisation write (stream EPI) for /Volumes/ElifOymagil/new_participants_analysis/analysis/prep/aamod_norm_write_00001/sub-01/tactile_run-01 Loaded datecheck was XjjaG81ajY/DKnn2FLnkUw== and calc...

Multiecho pipeline

1

Hi, It seems like I will be needing to use a multiecho sequence for one of our studies. I believe aa does not support multiecho processing. I see that people...